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Table 5. Tissue specific transcripts

Tissue specific transcripts from colon epithelium, brain, melanocytes, keratinocytes, breast epithelium, lung epithelium, prostate, and kidney epithelium.  The number in parentheses adjacent to the tissue type indicates the percent of transcripts exclusively expressed in a given tissue at > 10 copies per cell.  Transcript tag denotes the 10bp tag adjacent to 4bp NlaIII anchoring enzyme site, Copies/cell denotes the transcript copies per cell expressed, and UniGene Description provides a description of each matching UniGene cluster (from UniGene Build No. 67).

Colon epithelium (1.76%)

Tag sequence

Copies/cell

Unigene Description

ATACTCCACT

431

Guanylate cyclase activator 2 (guanylin, intestinal, heat-stable)

TCAGCTGCAA

220

No match

GTCATCACCA

174

H.sapiens mRNA for GCAP-II/uroguanylin precursor

CCTTCAAATC

141

Carbonic anhydrase I

ACACCCATCA

89

No match

CCAACACCAG

86

No match

AATAGTTTCC

70

Pregnancy-specific beta-1 glycoprotein 6

CCAGGCGTCA

55

No match

GAACAGCTCA

55

ESTs

TACTCGGCCA

46

No match

GGGGGAGAAG

37

ESTs

AGTGGGCTCA

34

No match

GAGCACCGTG

34

No match

GATCTATCCA

31

ESTs

GAACGCCAGA

28

No match

GCCCTCGGAG

28

ESTs

ACAAGCCTAG

28

No match

GTCACAGGAA

28

No match

GCCCTCGGAG

28

Human homeobox protein Cdx2 mRNA, complete cds

CTAGGATGAT

28

ESTs

CCAACTATCG

24

No match

CTGACGGGGA

24

ESTs

GAGGGTTTTA

24

Homo sapiens C19steroid specific UDP-glucuronosyltransferase mRNA, complete cds

GGGGTCCCAT

24

No match

GCCAGGTCAC

21

No match

AGAACACCAA

21

No match

AATCCCGCCC

21

Homo sapiens hAQP8 mRNA for aquaporin 8, complete cds

ACACTGCCTC

18

No match

AGAGTCCAGG

18

Homo sapiens carcinoembryonic antigen (CGM2) mRNA, complete cds

CCAGACGTAG

18

No match

GAGGCCCCCG

18

No match

CTGTGTGCCC

15

ESTs, Weakly similar to tryptase-III [H.sapiens]

GAGAGGATGG

15

ESTs

GGCTGAACCA

15

No match

CCAAATCATT

15

No match

ACGGCTGGGC

15

No match

ACCTTCATCT

15

EST

AGGGCTTGAG

15

No match

ACCTTCATCT

15

Human rearranged metabotropic glutamate receptor type II (GLUR2) mRNA, complete cds

TCAGGCCAGA

15

No match

CTGTGTGCCC

15

ESTs

GGATGTCAAC

15

Human RecA-like protein (hREC2) mRNA, complete cds

ATCTGGAGCA

15

Alcohol dehydrogenase 1 (class I), alpha polypeptide

GAGAGGATGG

15

INTEGRAL MEMBRANE PROTEIN E16

ATCTGGAGCA

15

Alcohol dehydrogenase 3 (class I), gamma polypeptide

GGATGTCAAC

15

Polymeric immunoglobulin receptor

CACAGACACA

12

No match

TGCTCCTAAC

12

No match

TATACCCGGA

12

No match

TATCCTGATG

12

No match

GGCCCTCCCG

12

No match

GTAGCGATGG

12

Pim-1 oncogene

GCAGGTTGTG

12

No match

TGGGAACCGG

9

No match

ACACCTCTCT

9

No match

GGAAAACAGG

9

No match

CAGGCGGCAC

9

No match

CAGGTTGGTC

9

Homo sapiens hRVP1 mRNA for RVP1, complete cds

GGGATATAAA

9

No match

GTGGAAAATC

9

No match

GTGTGTGAAT

9

No match

ATGTGACACT

9

No match

ATGGTGTAAT

9

ESTs

TCACATTGAT

9

H.sapiens mRNA for LI-cadherin

TAACTAAACA

9

No match

TGCCCGGGTC

9

No match

TAGTCGGAAA

9

No match

GCTATACGGG

9

No match

TCACACCCCA

9

No match

CTGCCCGAAC

9

ESTs

AGTCACCTCT

9

No match

TCATTGGTTT

9

No match

TCCTCTCCTC

9

No match

CCTCTCGGCC

9

No match

CCACTGAAGT

9

No match

CTGGCTTGCT

9

No match

GAAAACAGAA

9

EST

AAAGCACGTC

9

No match

GAAAACAGAA

9

ESTs, Weakly similar to synapse-associated protein sap47-1 [D.melanogaster]

TTGATTCCAT

9

No match

AAACAGGCAC

9

No match

CTTACAGTCC

9

No match

GAATGGACTC

9

No match

GAACCCAAAC

9

No match

GAAAACAGAA

9

ESTs

Brain (1.36%)

ACTTTGTCCC

237

Glial fibrillary acidic protein

GTGCGAATCC

117

ESTs

CAAAAAGTTA

53

ESTs

TTAACTTTAT

49

Homo sapiens neuroendocrine-specific protein A (NSP) mRNA, complete cds

CAGCCAAATG

43

ESTs

GCCTGTGGTG

41

Homo sapiens LY6H mRNA, complete cds

CTTAGGGACA

39

ESTs

TTGGAGGTGA

33

ESTs

ATTCCATTTC

30

ESTs

ATTCCATTTC

30

ESTs, Highly similar to RAS-RELATED PROTEIN RAB-10 [Canis familiaris]

AGAGAGCGGA

28

Human guanine nucleotide-binding regulatory protein (Go-alpha) gene

TTCTCAATAC

28

Homo