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Table 3. Transcripts in colon cancer transcriptome

Unique transcripts detected in 643,283 total tags from colon cancer cells. Transcript Tag denotes the 10bp tag adjacent to the 4bp NlaIII anchoring enzyme site, Copies/cell denotes the transcript copies per cell expressed, and UniGene Description provides a functional description of each matching UniGene cluster (from UniGene Build No. 67). Transcripts expressed at >500 transcript copies per cell are listed. Entire transcript table can be downloaded as a Microsoft Access spreadsheet: Table 3.mdb

Tag

Copies/cell

Unigene Description

CCCATCGTCC

2672

Tag matches mitochondrial sequence

TGTGTTGAGA

1672

Translation elongation factor 1-alpha-1

GGATTTGGCC

1663

Ribosomal protein, large P2 / Ribosomal protein S26 / Human mRNA for PIG-B, complete cds

CCCGTCCGGA

1559

60S RIBOSOMAL PROTEIN L13

ATGGCTGGTA

1555

40S RIBOSOMAL PROTEIN S2

GTGAAACCCC

1482

Multiple matches

CCTCCAGCTA

1468

Keratin 8

TTGGTCCTCT

1453

60S RIBOSOMAL PROTEIN L41

TGATTTCACT

1434

EST / Tag matches mitochondrial sequence

CCTGTAATCC

1372

Multiple matches

ACTTTTTCAA

1367

Tag matches mitochondrial sequence

AAAAAAAAAA

1357

Multiple matches

GAGGGAGTTT

1290

Ribosomal protein L27a

GCCGAGGAAG

1141

Human mRNA for ribosomal protein S12

CACCTAATTG

1137

Tag matches mitochondrial sequence

CGCCGCCGGC

1098

Human ribosomal protein L35 mRNA, complete cds

GGGGAAATCG

1092

THYMOSIN BETA-10

GAAAAATGGT

1056

Laminin receptor (2H5 epitope)

GGGCTGGGGT

1028

H.sapiens mRNA for ribosomal protein L29 / Homo sapiens sperm acrosomal protein mRNA

GCCGGGTGGG

986

Basigin

AGCCCTACAA

945

Tag matches mitochondrial sequence

CTGGGTTAAT

943

40S RIBOSOMAL PROTEIN S19

CAAACCATCC

927

Keratin 18

TGCACGTTTT

916

Human mRNA for antileukoprotease (ALP) from cervix uterus

AGGCTACGGA

905

60S RIBOSOMAL PROTEIN L13A

GCAGCCATCC

861

Ribosomal protein L28

TTCAATAAAA

851

Ribosomal protein, large, P1 / TRANSCOBALAMIN I PRECURSOR

CTAAGACTTC

833

Tag matches mitochondrial sequence

TGGTGTTGAG

830

Human DNA sequence from clone 1033B10 on chromosome 6p21.2-21.31

TACCATCAAT

828

Glyceraldehyde-3-phosphate dehydrogenase

TTCATACACC

814

Tag matches mitochondrial sequence

CCACTGCACT

800

Multiple matches

ACTAACACCC

795

Tag matches mitochondrial sequence

AAGGTGGAGG

794

60S RIBOSOMAL PROTEIN L18A

AGCACCTCCA

787

Eukaryotic translation elongation factor 2

CACAAACGGT

761

40S RIBOSOMAL PROTEIN S27

AGGAAAGCTG

732

ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L36 [Rattus norvegicus]

GTGAAACCCT

729

Multiple matches

AATCCTGTGG

711

Ribosomal protein L8

TTGGGGTTTC

698

Ferritin heavy chain

AAGACAGTGG

696

Ribosomal protein L37a

ATTTGAGAAG

680

Tag matches mitochondrial sequence

GCCGTGTCCG

679

Human ribosomal protein S6 mRNA, complete cds

CGCCGGAACA

678

Ribosomal protein L4

TCTCCATACC

661

Tag matches mitochondrial sequence

ACATCATCGA

661

Ribosomal protein L12

AACGCGGCCA

644

Macrophage migration inhibitory factor

AGGGCTTCCA

643

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX SUBUNIT VI REQUIRING PROTEIN

CCGTCCAAGG

631

Ribosomal protein S16

CGCTGGTTCC

626

Homo sapiens ribosomal protein L11 mRNA, complete cds

CTCAACATCT

615

Ribosomal protein, large, P0

ACTCCAAAAA

608

H.sapiens mRNA for transmembrane protein rnp24 / Human insulinoma rig-analog mRNA encoding DNA-binding protein

CCTAGCTGGA

606

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A

GTGAAGGCAG

596

Ribosomal protein S3A

AGCTCTCCCT

551

60S RIBOSOMAL PROTEIN L23

TAGGTTGTCT

537

TRANSLATIONALLY CONTROLLED TUMOR PROTEIN

GGACCACTGA

522

Ribosomal protein L3

AAGGAGATGG

521

Ribosomal protein L31

AACTAAAAAA

510

Ubiquitin A-52 residue ribosomal protein fusion product 1

GGCTGGGGGC

507

Human profilin mRNA, complete cds

CCAGAACAGA

503

Deoxythymidylate kinase / 60S RIBOSOMAL PROTEIN L30

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