Unique
transcripts detected in 643,283 total tags from colon
cancer cells. Transcript Tag denotes the 10bp tag adjacent
to the 4bp NlaIII anchoring enzyme site, Copies/cell
denotes the transcript copies per cell expressed, and
UniGene Description provides a functional description
of each matching UniGene cluster (from UniGene Build
No. 67). Transcripts expressed at >500 transcript
copies per cell are listed. Entire transcript table
can be downloaded as a Microsoft Access spreadsheet:
Table
3.mdb
|
Tag
|
Copies/cell
|
Unigene
Description |
|
CCCATCGTCC
|
2672
|
Tag
matches mitochondrial sequence |
|
TGTGTTGAGA
|
1672
|
Translation
elongation factor 1-alpha-1 |
|
GGATTTGGCC
|
1663
|
Ribosomal
protein, large P2 / Ribosomal protein S26 / Human
mRNA for PIG-B, complete cds |
|
CCCGTCCGGA
|
1559
|
60S
RIBOSOMAL PROTEIN L13 |
|
ATGGCTGGTA
|
1555
|
40S
RIBOSOMAL PROTEIN S2 |
|
GTGAAACCCC
|
1482
|
Multiple
matches |
|
CCTCCAGCTA
|
1468
|
Keratin
8 |
|
TTGGTCCTCT
|
1453
|
60S
RIBOSOMAL PROTEIN L41 |
|
TGATTTCACT
|
1434
|
EST
/ Tag matches mitochondrial sequence |
|
CCTGTAATCC
|
1372
|
Multiple
matches |
|
ACTTTTTCAA
|
1367
|
Tag
matches mitochondrial sequence |
|
AAAAAAAAAA
|
1357
|
Multiple
matches |
|
GAGGGAGTTT
|
1290
|
Ribosomal
protein L27a |
|
GCCGAGGAAG
|
1141
|
Human
mRNA for ribosomal protein S12 |
|
CACCTAATTG
|
1137
|
Tag
matches mitochondrial sequence |
|
CGCCGCCGGC
|
1098
|
Human
ribosomal protein L35 mRNA, complete cds
|
|
GGGGAAATCG
|
1092
|
THYMOSIN
BETA-10 |
|
GAAAAATGGT
|
1056
|
Laminin
receptor (2H5 epitope) |
|
GGGCTGGGGT
|
1028
|
H.sapiens
mRNA for ribosomal protein L29 / Homo sapiens
sperm acrosomal protein mRNA |
|
GCCGGGTGGG
|
986
|
Basigin
|
|
AGCCCTACAA
|
945
|
Tag
matches mitochondrial sequence |
|
CTGGGTTAAT
|
943
|
40S
RIBOSOMAL PROTEIN S19 |
|
CAAACCATCC
|
927
|
Keratin
18 |
|
TGCACGTTTT
|
916
|
Human
mRNA for antileukoprotease (ALP) from cervix uterus
|
|
AGGCTACGGA
|
905
|
60S
RIBOSOMAL PROTEIN L13A |
|
GCAGCCATCC
|
861
|
Ribosomal
protein L28 |
|
TTCAATAAAA
|
851
|
Ribosomal
protein, large, P1 / TRANSCOBALAMIN I PRECURSOR
|
|
CTAAGACTTC
|
833
|
Tag
matches mitochondrial sequence |
|
TGGTGTTGAG
|
830
|
Human
DNA sequence from clone 1033B10 on chromosome
6p21.2-21.31 |
|
TACCATCAAT
|
828
|
Glyceraldehyde-3-phosphate
dehydrogenase |
|
TTCATACACC
|
814
|
Tag
matches mitochondrial sequence |
|
CCACTGCACT
|
800
|
Multiple
matches |
|
ACTAACACCC
|
795
|
Tag
matches mitochondrial sequence |
|
AAGGTGGAGG
|
794
|
60S
RIBOSOMAL PROTEIN L18A |
|
AGCACCTCCA
|
787
|
Eukaryotic
translation elongation factor 2 |
|
CACAAACGGT
|
761
|
40S
RIBOSOMAL PROTEIN S27 |
|
AGGAAAGCTG
|
732
|
ESTs,
Highly similar to 60S RIBOSOMAL PROTEIN L36 [Rattus
norvegicus] |
|
GTGAAACCCT
|
729
|
Multiple
matches |
|
AATCCTGTGG
|
711
|
Ribosomal
protein L8 |
|
TTGGGGTTTC
|
698
|
Ferritin
heavy chain |
|
AAGACAGTGG
|
696
|
Ribosomal
protein L37a |
|
ATTTGAGAAG
|
680
|
Tag
matches mitochondrial sequence |
|
GCCGTGTCCG
|
679
|
Human
ribosomal protein S6 mRNA, complete cds
|
|
CGCCGGAACA
|
678
|
Ribosomal
protein L4 |
|
TCTCCATACC
|
661
|
Tag
matches mitochondrial sequence |
|
ACATCATCGA
|
661
|
Ribosomal
protein L12 |
|
AACGCGGCCA
|
644
|
Macrophage
migration inhibitory factor |
|
AGGGCTTCCA
|
643
|
UBIQUINOL-CYTOCHROME
C REDUCTASE COMPLEX SUBUNIT VI REQUIRING PROTEIN
|
|
CCGTCCAAGG
|
631
|
Ribosomal
protein S16 |
|
CGCTGGTTCC
|
626
|
Homo
sapiens ribosomal protein L11 mRNA, complete cds
|
|
CTCAACATCT
|
615
|
Ribosomal
protein, large, P0 |
|
ACTCCAAAAA
|
608
|
H.sapiens
mRNA for transmembrane protein rnp24 / Human insulinoma
rig-analog mRNA encoding DNA-binding protein
|
|
CCTAGCTGGA
|
606
|
PEPTIDYL-PROLYL
CIS-TRANS ISOMERASE A |
|
GTGAAGGCAG
|
596
|
Ribosomal
protein S3A |
|
AGCTCTCCCT
|
551
|
60S
RIBOSOMAL PROTEIN L23 |
|
TAGGTTGTCT
|
537
|
TRANSLATIONALLY
CONTROLLED TUMOR PROTEIN |
|
GGACCACTGA
|
522
|
Ribosomal
protein L3 |
|
AAGGAGATGG
|
521
|
Ribosomal
protein L31 |
|
AACTAAAAAA
|
510
|
Ubiquitin
A-52 residue ribosomal protein fusion product
1 |
|
GGCTGGGGGC
|
507
|
Human
profilin mRNA, complete cds |
|
CCAGAACAGA
|
503
|
Deoxythymidylate
kinase / 60S RIBOSOMAL PROTEIN L30 |
