Glossary

Colon Cell Line The number of SAGE tags that were observed in 60,373 tags from colon cell lines for this transcript. Two cell lines that were used in this study are SW837 and Caco 2.
Colon tumor The number of SAGE tags that were observed in 60,878 tags from colon tumors for this transcript.
Gene Name The name of the gene that matches the transcript containing the SAGE tag. Note that these are putative identifications based on database analyses and further experimentation should be performed to confirm these matches.
Induction

Induction was calculated by dividing the number of SAGE tags observed in p53 infected cells by the number of tags observed in the control lacZ infected cells. To avoid division by 0, a tag value of 1 was used instead of 0.

lacZ The number of SAGE tags that were observed in 53,022 tags from Ad-lacZ infected DLD-1 cells for this transcript.
Normal Colon The number of SAGE tags that were observed in 62,168 tags from normal colon for this transcript.
p53 The number of SAGE tags that were observed in 51,853 tags from Ad-p53 infected DLD-1 cells for this transcript.
Ratio CL/NC The ratio of the number of SAGE tags observed in colon cell lines to the number of tags observed in normal colon. To avoid division by 0, a tag value of 1 was used for any tag that was not detectable in normal colon.
Ratio CT/NC The ratio of the number of SAGE tags observed in colon tumors to the number of tags observed in normal colon. To avoid division by 0, a tag value of 1 was used for any tag that was not detectable in normal colon.
Repression

Repression was calculated by dividing the number of SAGE tags observed in lacZ infected cells by the number of tags observed in p53 infected cells. To avoid division by 0, a tag value of 1 was used instead of 0.

SAGE UID Human SAGE tag unique identifier
   
   
   
   
   
   
   
   
   
   
   
   

 

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